1 Response_reg#1
5-114 aa · 110 aa · 62.1% of protein
Raw token
Response_reg:5:1.17e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0P71_RS05730
Response regulator, unclassified
Clostridioides difficile · GCF_004315625
ClassRRTypeunclassifiedLength177 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_004315625#E0P71_RS05730Stable P2CS identifier used across views.
GenomeGCF_004315625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length177 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 177 aa (62.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa177 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.17e-23:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_004315625::NZ_BIQO01000014.1::G00015
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span1-3345Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004315625::NZ_BIQO01000014.1::G00015Context members
E0P71_RS05730E0P71_RS05735E0P71_RS05740
Partner locus tags
E0P71_RS05730E0P71_RS05735E0P71_RS05740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131072953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0P71_RS05730Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIQO01000014.1Sequence record reported by the local genomic context database.
Genomic interval1-531 nt531 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-3 345 ntGCF_004315625::NZ_BIQO01000014.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004315625::NZ_BIQO01000014.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIQO01000014.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 345 nt3 345 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 345 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
E0P71_RS05730GCF_004315625#E0P71_RS05730
RRunclassifiedCurrent focus
1-531 nt · Reverse (-)
E0P71_RS05735GCF_004315625#E0P71_RS05735
HKClassic
581-2 596 nt · Reverse (-)
E0P71_RS05740GCF_004315625#E0P71_RS05740
RROmpR
2 668-3 345 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS17365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407979
Simplified PFAM architecture for RROC_1407979
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407979
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS17365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004315625
AssemblyASM431562v1 · Scaffoldhaploid
Genome composition4 219 248 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 51 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key