1 Response_reg#1
1-99 aa · 99 aa · 45.4% of protein
Raw token
Response_reg:1:2.08e-29:99:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0O89_RS18040
Response regulator OmpR family
Clostridioides difficile · GCF_004315145
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004315145#E0O89_RS18040Stable P2CS identifier used across views.
GenomeGCF_004315145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 218 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
140-214 aa · 75 aa · 34.4% of protein
Raw token
Trans_reg_C:140:8.56e-35:214:75:77- Raw architecture: Response_reg:1:2.08e-29:99:100:111#Trans_reg_C:140:8.56e-35:214:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004315145::NZ_BIPQ01000119.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5212-7002Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004315145::NZ_BIPQ01000119.1::G00056Context members
E0O89_RS18035E0O89_RS18040
Partner locus tags
E0O89_RS18035E0O89_RS18040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131011169.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0O89_RS18040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIPQ01000119.1Sequence record reported by the local genomic context database.
Genomic interval6 344-7 002 nt659 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 212-7 002 ntGCF_004315145::NZ_BIPQ01000119.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004315145::NZ_BIPQ01000119.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIPQ01000119.1All displayed genes belong to this local TCS context.
Neighborhood span5 212-7 002 nt1 791 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 212 nt7 002 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0O89_RS18035GCF_004315145#E0O89_RS18035
HKClassic
5 212-6 294 nt · Reverse (-)
E0O89_RS18040GCF_004315145#E0O89_RS18040
RROmpRCurrent focus
6 344-7 002 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS08860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080372
Simplified PFAM architecture for RROC_1080372
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1080372
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS08860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004315145
AssemblyASM431514v1 · Scaffoldhaploid
Genome composition4 040 282 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key