1 Response_reg#1
3-114 aa · 112 aa · 31.5% of protein
Raw token
Response_reg:3:7.09e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0O89_RS13550
Response regulator, unclassified
Clostridioides difficile · GCF_004315145
ClassRRTypeunclassifiedLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004315145#E0O89_RS13550Stable P2CS identifier used across views.
GenomeGCF_004315145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 355 aa (65.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 AAA_5#2
157-275 aa · 119 aa · 33.5% of protein
Raw token
AAA_5:157:0.00000000184:275:128:135- Raw architecture: Response_reg:3:7.09e-26:114:112:111#AAA_5:157:0.00000000184:275:128:135
- Domain description: 1 Response_reg,1 AAA_5
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004315145::NZ_BIPQ01000056.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3061Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004315145::NZ_BIPQ01000056.1::G00041Context members
E0O89_RS13550E0O89_RS13555
Partner locus tags
E0O89_RS13550E0O89_RS13555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074105348.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0O89_RS13550Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIPQ01000056.1Sequence record reported by the local genomic context database.
Genomic interval1-1 067 nt1 067 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-3 061 ntGCF_004315145::NZ_BIPQ01000056.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004315145::NZ_BIPQ01000056.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIPQ01000056.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 061 nt3 061 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 061 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0O89_RS13550GCF_004315145#E0O89_RS13550
RRunclassifiedCurrent focus
1-1 067 nt · Reverse (-)
E0O89_RS13555GCF_004315145#E0O89_RS13555
HKClassic
1 067-3 061 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0208990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0333905
Simplified PFAM architecture for RROC_0333905
PFAM domain coverage: 386 / 440 aa (87.7%)
1 aa440 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[3-113] | Sigma54_activat[137-300] | AAA_lid_14[306-375] | HTH_8[397-437]
- Domain count: 4
- Matched identifier: RROC_0333905
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Sigma54_activat 137-300 ; Sigma54_activat 137-300 ; AAA_lid_14 306-375 ; AAA_lid_14 306-375 ; HTH_8 397-437 ; HTH_8 397-437
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0208990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004315145
AssemblyASM431514v1 · Scaffoldhaploid
Genome composition4 040 282 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key