1 Response_reg#1
1-65 aa · 65 aa · 37.1% of protein
Raw token
Response_reg:1:1.85e-20:65:66:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0P09_RS20060
Response regulator OmpR family
Clostridioides difficile · GCF_004315045
ClassRRTypeOmpRLength175 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004315045#E0P09_RS20060Stable P2CS identifier used across views.
GenomeGCF_004315045Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length175 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage139 / 175 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa175 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
98-171 aa · 74 aa · 42.3% of protein
Raw token
Trans_reg_C:98:3.23e-31:171:77:77- Raw architecture: Response_reg:1:1.85e-20:65:66:111#Trans_reg_C:98:3.23e-31:171:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004315045::NZ_BIPL01000117.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1656Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004315045::NZ_BIPL01000117.1::G00063Context members
E0P09_RS20060E0P09_RS20065
Partner locus tags
E0P09_RS20060E0P09_RS20065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131010615.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0P09_RS20060Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIPL01000117.1Sequence record reported by the local genomic context database.
Genomic interval1-529 nt529 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 656 ntGCF_004315045::NZ_BIPL01000117.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004315045::NZ_BIPL01000117.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIPL01000117.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 656 nt1 656 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 656 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0P09_RS20060GCF_004315045#E0P09_RS20060
RROmpRCurrent focus
1-529 nt · Forward (+)
E0P09_RS20065GCF_004315045#E0P09_RS20065
HKClassic
526-1 656 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451305#QEE_RS17095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1589872
Simplified PFAM architecture for RROC_1589872
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1589872
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000451305#QEE_RS17095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004315045
AssemblyASM431504v1 · Scaffoldhaploid
Genome composition4 224 708 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 52 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key