1 Response_reg#1
4-114 aa · 111 aa · 45.3% of protein
Raw token
Response_reg:4:9.44e-23:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0O69_RS11875
Response regulator LytTR family
Clostridioides difficile · GCF_004314985
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004314985#E0O69_RS11875Stable P2CS identifier used across views.
GenomeGCF_004314985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 245 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-220 aa · 79 aa · 32.2% of protein
Raw token
LytTR:142:0.0000000000000626:220:80:98- Raw architecture: Response_reg:4:9.44e-23:114:113:111#LytTR:142:0.0000000000000626:220:80:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004314985::NZ_BIPI01000050.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span20558-21295Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314985::NZ_BIPI01000050.1::G00035Context members
E0O69_RS11875
Partner locus tags
E0O69_RS11875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131038665.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0O69_RS11875Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIPI01000050.1Sequence record reported by the local genomic context database.
Genomic interval20 558-21 295 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 558-21 295 ntGCF_004314985::NZ_BIPI01000050.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314985::NZ_BIPI01000050.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIPI01000050.1All displayed genes belong to this local TCS context.
Neighborhood span20 558-21 295 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 558 nt21 295 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0O69_RS11875GCF_004314985#E0O69_RS11875
RRLytTRCurrent focus
20 558-21 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314985#E0O69_RS11875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0794127
Simplified PFAM architecture for RROC_0794127
PFAM domain coverage: 203 / 245 aa (82.9%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[143-235]
- Domain count: 2
- Matched identifier: RROC_0794127
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 143-235 ; LytTR 143-235
Cluster members and taxonomy
Representative gene: GCF_004314985#E0O69_RS11875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314985
AssemblyASM431498v1 · Scaffoldhaploid
Genome composition4 140 027 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 46 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key