1 HisKA#1
9-67 aa · 59 aa · 25.9% of protein
Raw token
HisKA:9:0.0000000000000953:67:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0O51_RS05080
Histidine kinase, Classic
Clostridioides difficile · GCF_004314745
ClassHKTypeClassicLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004314745#E0O51_RS05080Stable P2CS identifier used across views.
GenomeGCF_004314745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 228 aa (72.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
123-228 aa · 106 aa · 46.5% of protein
Raw token
HATPase_c:123:4.7e-27:228:107:109- Raw architecture: HisKA:9:0.0000000000000953:67:59:64#HATPase_c:123:4.7e-27:228:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004314745::NZ_BIOW01000008.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span96994-97680Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314745::NZ_BIOW01000008.1::G00016Context members
E0O51_RS05080
Partner locus tags
E0O51_RS05080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165477604.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0O51_RS05080Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIOW01000008.1Sequence record reported by the local genomic context database.
Genomic interval96 994-97 680 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 994-97 680 ntGCF_004314745::NZ_BIOW01000008.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314745::NZ_BIOW01000008.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIOW01000008.1All displayed genes belong to this local TCS context.
Neighborhood span96 994-97 680 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 994 nt97 680 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0O51_RS05080GCF_004314745#E0O51_RS05080
HKClassicCurrent focus
96 994-97 680 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314745#E0O51_RS05080The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2926552
Simplified PFAM architecture for HKOC_2926552
PFAM domain coverage: 163 / 228 aa (71.5%)
1 aa228 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[10-67] | HATPase_c[123-227]
- Domain count: 2
- Matched identifier: HKOC_2926552
- Positioned domains: HisKA 10-67 ; HATPase_c 123-227
Cluster members and taxonomy
Representative gene: GCF_004314745#E0O51_RS05080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314745
AssemblyASM431474v1 · Scaffoldhaploid
Genome composition4 146 097 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 42 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key