1 Response_reg#1
4-113 aa · 110 aa · 57.3% of protein
Raw token
Response_reg:4:7.11e-29:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0O07_RS04890
Response regulator, unclassified
Clostridioides difficile · GCF_004314405
ClassRRTypeunclassifiedLength192 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004314405#E0O07_RS04890Stable P2CS identifier used across views.
GenomeGCF_004314405Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length192 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 192 aa (57.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:7.11e-29:113:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004314405::NZ_BIOF01000003.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span233035-234820Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314405::NZ_BIOF01000003.1::G00011Context members
E0O07_RS04890E0O07_RS04895
Partner locus tags
E0O07_RS04890E0O07_RS04895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021373602.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0O07_RS04890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIOF01000003.1Sequence record reported by the local genomic context database.
Genomic interval233 035-233 613 nt579 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span233 035-234 820 ntGCF_004314405::NZ_BIOF01000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314405::NZ_BIOF01000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIOF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span233 035-234 820 nt1 786 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
233 035 nt234 820 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0O07_RS04890GCF_004314405#E0O07_RS04890
RRunclassifiedCurrent focus
233 035-233 613 nt · Reverse (-)
E0O07_RS04895GCF_004314405#E0O07_RS04895
HKClassic
233 618-234 820 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS00605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0673236
Simplified PFAM architecture for RROC_0673236
PFAM domain coverage: 206 / 256 aa (80.5%)
1 aa256 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[157-253]
- Domain count: 2
- Matched identifier: RROC_0673236
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 157-253 ; LytTR 157-253
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS00605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314405
AssemblyASM431440v1 · Scaffoldhaploid
Genome composition4 036 451 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key