1 Response_reg#1
27-99 aa · 73 aa · 33.5% of protein
Raw token
Response_reg:27:0.000000000000177:99:75:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0N93_RS03765
Response regulator LytTR family
Clostridioides difficile · GCF_004314065
ClassRRTypeLytTRLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004314065#E0N93_RS03765Stable P2CS identifier used across views.
GenomeGCF_004314065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 218 aa (70.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 LytTR#2
119-199 aa · 81 aa · 37.2% of protein
Raw token
LytTR:119:2.25e-18:199:87:98- Raw architecture: Response_reg:27:0.000000000000177:99:75:111#LytTR:119:2.25e-18:199:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004314065::NZ_BINO01000018.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34020-34678Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314065::NZ_BINO01000018.1::G00006Context members
E0N93_RS03765
Partner locus tags
E0N93_RS03765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131036458.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0N93_RS03765Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BINO01000018.1Sequence record reported by the local genomic context database.
Genomic interval34 020-34 678 nt659 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 020-34 678 ntGCF_004314065::NZ_BINO01000018.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314065::NZ_BINO01000018.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BINO01000018.1All displayed genes belong to this local TCS context.
Neighborhood span34 020-34 678 nt659 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 020 nt34 678 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0N93_RS03765GCF_004314065#E0N93_RS03765
RRLytTRCurrent focus
34 020-34 678 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314065#E0N93_RS03765The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1821017
Simplified PFAM architecture for RROC_1821017
PFAM domain coverage: 160 / 218 aa (73.4%)
1 aa218 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[24-98] | LytTR[121-205]
- Domain count: 2
- Matched identifier: RROC_1821017
- Positioned domains: Response_reg 24-98 ; Response_reg 24-98 ; LytTR 121-205 ; LytTR 121-205
Cluster members and taxonomy
Representative gene: GCF_004314065#E0N93_RS03765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314065
AssemblyASM431406v1 · Scaffoldhaploid
Genome composition3 980 191 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key