1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:8.42e-28:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0O11_RS01195
Response regulator OmpR family
Clostridioides difficile · GCF_004314045
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004314045#E0O11_RS01195Stable P2CS identifier used across views.
GenomeGCF_004314045Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:2.67e-30:232:78:77- Raw architecture: Response_reg:12:8.42e-28:120:110:111#Trans_reg_C:155:2.67e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004314045::NZ_BINN01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span249395-251351Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314045::NZ_BINN01000001.1::G00003Context members
E0O11_RS01195E0O11_RS01200
Partner locus tags
E0O11_RS01195E0O11_RS01200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330404490.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0O11_RS01195Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BINN01000001.1Sequence record reported by the local genomic context database.
Genomic interval249 395-250 120 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span249 395-251 351 ntGCF_004314045::NZ_BINN01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314045::NZ_BINN01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BINN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span249 395-251 351 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
249 395 nt251 351 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0O11_RS01195GCF_004314045#E0O11_RS01195
RROmpRCurrent focus
249 395-250 120 nt · Forward (+)
E0O11_RS01200GCF_004314045#E0O11_RS01200
HKClassic
250 098-251 351 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314005#E0N82_RS12895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0868465
Simplified PFAM architecture for RROC_0868465
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0868465
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_004314005#E0N82_RS12895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314045
AssemblyASM431404v1 · Scaffoldhaploid
Genome composition4 158 367 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key