1 HisKA#1
93-158 aa · 66 aa · 21.2% of protein
Raw token
HisKA:93:0.000000355:158:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0N91_RS07545
Histidine kinase, Classic
Clostridioides difficile · GCF_004314025
ClassHKTypeClassicLength312 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004314025#E0N91_RS07545Stable P2CS identifier used across views.
GenomeGCF_004314025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 312 aa (53.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
210-310 aa · 101 aa · 32.4% of protein
Raw token
HATPase_c:210:2.7e-24:310:101:109- Raw architecture: HisKA:93:0.000000355:158:66:64#HATPase_c:210:2.7e-24:310:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004314025::NZ_BINM01000029.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-941Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314025::NZ_BINM01000029.1::G00021Context members
E0N91_RS07545
Partner locus tags
E0N91_RS07545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236877350.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0N91_RS07545Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BINM01000029.1Sequence record reported by the local genomic context database.
Genomic interval1-941 nt941 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-941 ntGCF_004314025::NZ_BINM01000029.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314025::NZ_BINM01000029.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BINM01000029.1All displayed genes belong to this local TCS context.
Neighborhood span1-941 nt941 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt941 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0N91_RS07545GCF_004314025#E0N91_RS07545
HKClassicCurrent focus
1-941 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314025#E0N91_RS07545The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875950
Simplified PFAM architecture for HKOC_2875950
PFAM domain coverage: 173 / 312 aa (55.4%)
1 aa312 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[93-158] | HATPase_c[205-311]
- Domain count: 2
- Matched identifier: HKOC_2875950
- Positioned domains: HisKA 93-158 ; HATPase_c 205-311
Cluster members and taxonomy
Representative gene: GCF_004314025#E0N91_RS07545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314025
AssemblyASM431402v1 · Scaffoldhaploid
Genome composition4 149 551 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 45 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key