1 HisKA#1
246-312 aa · 67 aa · 14.3% of protein
Raw token
HisKA:246:0.0000000000000234:312:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0N82_RS13040
Histidine kinase, Classic
Clostridioides difficile · GCF_004314005
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004314005#E0N82_RS13040Stable P2CS identifier used across views.
GenomeGCF_004314005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 467 aa (32.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
365-450 aa · 86 aa · 18.4% of protein
Raw token
HATPase_c:365:0.000000069:450:90:109- Raw architecture: HisKA:246:0.0000000000000234:312:67:64#HATPase_c:365:0.000000069:450:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004314005::NZ_BINL01000122.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9507-10910Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314005::NZ_BINL01000122.1::G00034Context members
E0N82_RS13040
Partner locus tags
E0N82_RS13040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131034634.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0N82_RS13040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BINL01000122.1Sequence record reported by the local genomic context database.
Genomic interval9 507-10 910 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 507-10 910 ntGCF_004314005::NZ_BINL01000122.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314005::NZ_BINL01000122.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BINL01000122.1All displayed genes belong to this local TCS context.
Neighborhood span9 507-10 910 nt1 404 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 507 nt10 910 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0N82_RS13040GCF_004314005#E0N82_RS13040
HKClassicCurrent focus
9 507-10 910 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314005#E0N82_RS13040The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1751769
Simplified PFAM architecture for HKOC_1751769
PFAM domain coverage: 191 / 467 aa (40.9%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[192-232] | HisKA[247-312] | HATPase_c[364-447]
- Domain count: 3
- Matched identifier: HKOC_1751769
- Positioned domains: HAMP 192-232 ; HisKA 247-312 ; HATPase_c 364-447
Cluster members and taxonomy
Representative gene: GCF_004314005#E0N82_RS13040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314005
AssemblyASM431400v1 · Scaffoldhaploid
Genome composition3 985 032 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 90 · HK 45 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key