1 Response_reg#1
3-103 aa · 101 aa · 43.2% of protein
Raw token
Response_reg:3:3.37e-19:103:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0N70_RS03490
Response regulator LytTR family
Clostridioides difficile · GCF_004313925
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004313925#E0N70_RS03490Stable P2CS identifier used across views.
GenomeGCF_004313925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 234 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
131-209 aa · 79 aa · 33.8% of protein
Raw token
LytTR:131:0.00000000000000794:209:80:98- Raw architecture: Response_reg:3:3.37e-19:103:103:111#LytTR:131:0.00000000000000794:209:80:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004313925::NZ_BINH01000024.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span108-812Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004313925::NZ_BINH01000024.1::G00007Context members
E0N70_RS03490
Partner locus tags
E0N70_RS03490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131000562.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0N70_RS03490Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BINH01000024.1Sequence record reported by the local genomic context database.
Genomic interval108-812 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108-812 ntGCF_004313925::NZ_BINH01000024.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004313925::NZ_BINH01000024.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BINH01000024.1All displayed genes belong to this local TCS context.
Neighborhood span108-812 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 nt812 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0N70_RS03490GCF_004313925#E0N70_RS03490
RRLytTRCurrent focus
108-812 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004313925#E0N70_RS03490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1056711
Simplified PFAM architecture for RROC_1056711
PFAM domain coverage: 193 / 234 aa (82.5%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-102] | LytTR[132-224]
- Domain count: 2
- Matched identifier: RROC_1056711
- Positioned domains: Response_reg 3-102 ; Response_reg 3-102 ; LytTR 132-224 ; LytTR 132-224
Cluster members and taxonomy
Representative gene: GCF_004313925#E0N70_RS03490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004313925
AssemblyASM431392v1 · Scaffoldhaploid
Genome composition3 848 408 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key