1 HisKA#1
141-205 aa · 65 aa · 17.6% of protein
Raw token
HisKA:141:0.00000000000931:205:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0N76_RS09535
Histidine kinase, Classic
Clostridioides difficile · GCF_004313905
ClassHKTypeClassicLength370 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004313905#E0N76_RS09535Stable P2CS identifier used across views.
GenomeGCF_004313905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length370 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 370 aa (49.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa370 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-369 aa · 118 aa · 31.9% of protein
Raw token
HATPase_c:252:2.08e-18:369:119:109- Raw architecture: HisKA:141:0.00000000000931:205:65:64#HATPase_c:252:2.08e-18:369:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004313905::NZ_BING01000110.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1391-3320Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004313905::NZ_BING01000110.1::G00015Context members
E0N76_RS09535E0N76_RS09540
Partner locus tags
E0N76_RS09535E0N76_RS09540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021366862.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0N76_RS09535Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BING01000110.1Sequence record reported by the local genomic context database.
Genomic interval1 391-2 503 nt1 113 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 391-3 320 ntGCF_004313905::NZ_BING01000110.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004313905::NZ_BING01000110.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BING01000110.1All displayed genes belong to this local TCS context.
Neighborhood span1 391-3 320 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 391 nt3 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0N76_RS09535GCF_004313905#E0N76_RS09535
HKClassicCurrent focus
1 391-2 503 nt · Reverse (-)
E0N76_RS09540GCF_004313905#E0N76_RS09540
RROmpR
2 652-3 320 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451645#QS1_RS11055Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2682916
Simplified PFAM architecture for HKOC_2682916
PFAM domain coverage: 179 / 370 aa (48.4%)
1 aa370 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[142-205] | HATPase_c[253-367]
- Domain count: 2
- Matched identifier: HKOC_2682916
- Positioned domains: HisKA 142-205 ; HATPase_c 253-367
Cluster members and taxonomy
Representative gene: GCF_000451645#QS1_RS11055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004313905
AssemblyASM431390v1 · Scaffoldhaploid
Genome composition3 985 134 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key