1 Response_reg#1
1-99 aa · 99 aa · 42.9% of protein
Raw token
Response_reg:1:3.28e-24:99:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0N73_RS11310
Response regulator OmpR family
Clostridioides difficile · GCF_004313845
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004313845#E0N73_RS11310Stable P2CS identifier used across views.
GenomeGCF_004313845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 231 aa (76.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:150:1.08e-32:226:77:77- Raw architecture: Response_reg:1:3.28e-24:99:100:111#Trans_reg_C:150:1.08e-32:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004313845::NZ_BIND01000138.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7115-9218Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004313845::NZ_BIND01000138.1::G00032Context members
E0N73_RS11305E0N73_RS11310
Partner locus tags
E0N73_RS11305E0N73_RS11310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131083669.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0N73_RS11310Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIND01000138.1Sequence record reported by the local genomic context database.
Genomic interval8 522-9 218 nt697 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 115-9 218 ntGCF_004313845::NZ_BIND01000138.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004313845::NZ_BIND01000138.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIND01000138.1All displayed genes belong to this local TCS context.
Neighborhood span7 115-9 218 nt2 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 115 nt9 218 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0N73_RS11305GCF_004313845#E0N73_RS11305
HKClassic
7 115-8 518 nt · Reverse (-)
E0N73_RS11310GCF_004313845#E0N73_RS11310
RROmpRCurrent focus
8 522-9 218 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003862935#EGL90_RS01220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0868135
Simplified PFAM architecture for RROC_0868135
PFAM domain coverage: 184 / 241 aa (76.3%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[160-236]
- Domain count: 2
- Matched identifier: RROC_0868135
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 160-236 ; Trans_reg_C 160-236
Cluster members and taxonomy
Representative gene: GCF_003862935#EGL90_RS01220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004313845
AssemblyASM431384v1 · Scaffoldhaploid
Genome composition3 922 278 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 87 · HK 43 · RR 43CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key