1 HisKA_2#1
145-219 aa · 75 aa · 22.2% of protein
Raw token
HisKA_2:145:3.76e-16:219:76:76P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGL89_RS03980
Histidine kinase, Classic
Clostridioides difficile · GCF_003863255
ClassHKTypeClassicLength338 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003863255#EGL89_RS03980Stable P2CS identifier used across views.
GenomeGCF_003863255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_2HATPase_c
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 338 aa (51.2%)Merged over positioned domains only.
Domain description1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
239-336 aa · 98 aa · 29.0% of protein
Raw token
HATPase_c:239:0.000000104:336:114:109- Raw architecture: HisKA_2:145:3.76e-16:219:76:76#HATPase_c:239:0.000000104:336:114:109
- Domain description: 1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003863255::NZ_RQZY01000130.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span36-1053Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGL89_03980RefSeq proteinWP_148095133.1
Context group ID
GCF_003863255::NZ_RQZY01000130.1::G00014Context members
EGL89_RS03980
Partner locus tags
EGL89_RS03980
Partner old locus tags
EGL89_03980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148095133.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGL89_RS03980Primary locus identifier stored in the genes table.
Old locus tagEGL89_03980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RQZY01000130.1Sequence record reported by the local genomic context database.
Genomic interval36-1 053 nt1 018 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36-1 053 ntGCF_003863255::NZ_RQZY01000130.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003863255::NZ_RQZY01000130.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RQZY01000130.1All displayed genes belong to this local TCS context.
Neighborhood span36-1 053 nt1 018 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 nt1 053 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EGL89_RS03980GCF_003863255#EGL89_RS03980
HKClassicCurrent focus
36-1 053 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301905#BGU50_RS06025Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1728816
Simplified PFAM architecture for HKOC_1728816
PFAM domain coverage: 302 / 469 aa (64.4%)
1 aa469 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[6-141] | HisKA_2[276-347] | HATPase_c[373-466]
- Domain count: 3
- Matched identifier: HKOC_1728816
- Positioned domains: GAF_PdtaS 6-141 ; HisKA_2 276-347 ; HATPase_c 373-466
Cluster members and taxonomy
Representative gene: GCF_002301905#BGU50_RS06025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003863255
AssemblyASM386325v1 · Contighaploid
Genome composition4 057 516 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key