1 HisKA#1
304-371 aa · 68 aa · 13.7% of protein
Raw token
HisKA:304:0.000000000000249:371:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGM01_RS18885
Histidine kinase, Classic
Clostridioides difficile · GCF_003863195
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003863195#EGM01_RS18885Stable P2CS identifier used across views.
GenomeGCF_003863195Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 498 aa (30.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
416-497 aa · 82 aa · 16.5% of protein
Raw token
HATPase_c:416:6.17e-21:497:82:109- Raw architecture: HisKA:304:0.000000000000249:371:68:64#HATPase_c:416:6.17e-21:497:82:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003863195::NZ_RRAK01000240.1::G00062
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7852-9345Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGM01_18895RefSeq proteinWP_125028596.1
Context group ID
GCF_003863195::NZ_RRAK01000240.1::G00062Context members
EGM01_RS18885
Partner locus tags
EGM01_RS18885
Partner old locus tags
EGM01_18895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_125028596.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGM01_RS18885Primary locus identifier stored in the genes table.
Old locus tagEGM01_18895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RRAK01000240.1Sequence record reported by the local genomic context database.
Genomic interval7 852-9 345 nt1 494 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 852-9 345 ntGCF_003863195::NZ_RRAK01000240.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003863195::NZ_RRAK01000240.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RRAK01000240.1All displayed genes belong to this local TCS context.
Neighborhood span7 852-9 345 nt1 494 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 852 nt9 345 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EGM01_RS18885GCF_003863195#EGM01_RS18885
HKClassicCurrent focus
7 852-9 345 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202670Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1338482
Simplified PFAM architecture for HKOC_1338482
PFAM domain coverage: 286 / 535 aa (53.5%)
1 aa535 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[32-139] | HisKA[304-371] | HATPase_c[416-525]
- Domain count: 3
- Matched identifier: HKOC_1338482
- Positioned domains: DUF4118 32-139 ; HisKA 304-371 ; HATPase_c 416-525
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003863195
AssemblyASM386319v1 · Contighaploid
Genome composition4 090 418 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 49 · RR 55CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key