1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:8.88e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGM04_RS10480
Response regulator OmpR family
Clostridioides difficile · GCF_003863155
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003863155#EGM04_RS10480Stable P2CS identifier used across views.
GenomeGCF_003863155Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 228 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:148:1.56e-19:223:77:77- Raw architecture: Response_reg:3:8.88e-28:115:113:111#Trans_reg_C:148:1.56e-19:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003863155::NZ_RRAN01000028.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53274-55246Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGM04_10480RefSeq proteinWP_021402235.1
Context group ID
GCF_003863155::NZ_RRAN01000028.1::G00034Context members
EGM04_RS10480EGM04_RS10485
Partner locus tags
EGM04_RS10480EGM04_RS10485
Partner old locus tags
EGM04_10480EGM04_10485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021402235.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X8RL15Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X8RL15_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGM04_RS10480Primary locus identifier stored in the genes table.
Old locus tagEGM04_10480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RRAN01000028.1Sequence record reported by the local genomic context database.
Genomic interval53 274-53 960 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 274-55 246 ntGCF_003863155::NZ_RRAN01000028.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003863155::NZ_RRAN01000028.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RRAN01000028.1All displayed genes belong to this local TCS context.
Neighborhood span53 274-55 246 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 274 nt55 246 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGM04_RS10480GCF_003863155#EGM04_RS10480
RROmpRCurrent focus
53 274-53 960 nt · Forward (+)
EGM04_RS10485GCF_003863155#EGM04_RS10485
HKClassic
53 954-55 246 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450425#QKW_RS19910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304790
Simplified PFAM architecture for RROC_1304790
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1304790
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000450425#QKW_RS19910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003863155
AssemblyASM386315v1 · Contighaploid
Genome composition4 269 376 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key