1 HisKA#1
214-274 aa · 61 aa · 14.1% of protein
Raw token
HisKA:214:0.0000000000562:274:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGL79_RS07305
Histidine kinase, Classic
Clostridioides difficile · GCF_003863075
ClassHKTypeClassicLength432 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003863075#EGL79_RS07305Stable P2CS identifier used across views.
GenomeGCF_003863075Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length432 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 432 aa (37.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
330-429 aa · 100 aa · 23.1% of protein
Raw token
HATPase_c:330:5.45e-25:429:100:109- Raw architecture: HisKA:214:0.0000000000562:274:61:64#HATPase_c:330:5.45e-25:429:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003863075::NZ_RQZO01000010.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span141362-143373Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGL79_07305RefSeq proteinWP_254052875.1
Context group ID
GCF_003863075::NZ_RQZO01000010.1::G00026Context members
EGL79_RS07305EGL79_RS07310
Partner locus tags
EGL79_RS07305EGL79_RS07310
Partner old locus tags
EGL79_07305EGL79_07310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254052875.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGL79_RS07305Primary locus identifier stored in the genes table.
Old locus tagEGL79_07305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RQZO01000010.1Sequence record reported by the local genomic context database.
Genomic interval141 362-142 660 nt1 299 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span141 362-143 373 ntGCF_003863075::NZ_RQZO01000010.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003863075::NZ_RQZO01000010.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RQZO01000010.1All displayed genes belong to this local TCS context.
Neighborhood span141 362-143 373 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
141 362 nt143 373 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGL79_RS07305GCF_003863075#EGL79_RS07305
HKClassicCurrent focus
141 362-142 660 nt · Reverse (-)
EGL79_RS07310GCF_003863075#EGL79_RS07310
RROmpR
142 666-143 373 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0212785Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2113046
Simplified PFAM architecture for HKOC_2113046
PFAM domain coverage: 166 / 436 aa (38.1%)
1 aa436 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[217-278] | HATPase_c[330-433]
- Domain count: 2
- Matched identifier: HKOC_2113046
- Positioned domains: HisKA 217-278 ; HATPase_c 330-433
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0212785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003863075
AssemblyASM386307v1 · Contighaploid
Genome composition4 088 557 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key