1 Response_reg#1
5-116 aa · 112 aa · 58.6% of protein
Raw token
Response_reg:5:4.39e-32:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGL79_RS00395
Response regulator, AmiR_NasR family
Clostridioides difficile · GCF_003863075
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003863075#EGL79_RS00395Stable P2CS identifier used across views.
GenomeGCF_003863075Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 191 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:3.58e-20:186:49:49- Raw architecture: Response_reg:5:4.39e-32:116:112:111#ANTAR:138:3.58e-20:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003863075::NZ_RQZO01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79357-81334Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGL79_00395RefSeq proteinWP_124987976.1
Context group ID
GCF_003863075::NZ_RQZO01000001.1::G00004Context members
EGL79_RS00390EGL79_RS00395
Partner locus tags
EGL79_RS00390EGL79_RS00395
Partner old locus tags
EGL79_00390EGL79_00395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_124987976.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGL79_RS00395Primary locus identifier stored in the genes table.
Old locus tagEGL79_00395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RQZO01000001.1Sequence record reported by the local genomic context database.
Genomic interval80 759-81 334 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 357-81 334 ntGCF_003863075::NZ_RQZO01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003863075::NZ_RQZO01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RQZO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span79 357-81 334 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 357 nt81 334 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGL79_RS00390GCF_003863075#EGL79_RS00390
HKClassic
79 357-80 766 nt · Reverse (-)
EGL79_RS00395GCF_003863075#EGL79_RS00395
RRAmiR_NasRCurrent focus
80 759-81 334 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003863075#EGL79_RS00395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2168552
Simplified PFAM architecture for RROC_2168552
PFAM domain coverage: 164 / 191 aa (85.9%)
1 aa191 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[5-115] | ANTAR[134-186]
- Domain count: 2
- Matched identifier: RROC_2168552
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; ANTAR 134-186 ; ANTAR 134-186
Cluster members and taxonomy
Representative gene: GCF_003863075#EGL79_RS00395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003863075
AssemblyASM386307v1 · Contighaploid
Genome composition4 088 557 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key