1 HisKA#1
304-371 aa · 68 aa · 12.7% of protein
Raw token
HisKA:304:0.00000000000013:371:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGM11_RS16290
Histidine kinase, Classic
Clostridioides difficile · GCF_003863055
ClassHKTypeClassicLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003863055#EGM11_RS16290Stable P2CS identifier used across views.
GenomeGCF_003863055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 535 aa (33.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
416-525 aa · 110 aa · 20.6% of protein
Raw token
HATPase_c:416:2.53e-31:525:110:109- Raw architecture: HisKA:304:0.00000000000013:371:68:64#HATPase_c:416:2.53e-31:525:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003863055::NZ_RRAU01000031.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8298-10600Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGM11_16290RefSeq proteinWP_003439079.1
Context group ID
GCF_003863055::NZ_RRAU01000031.1::G00049Context members
EGM11_RS16290EGM11_RS16295
Partner locus tags
EGM11_RS16290EGM11_RS16295
Partner old locus tags
EGM11_16290EGM11_16295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003439079.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3MZ77Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3MZ77_CLODCDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGM11_RS16290Primary locus identifier stored in the genes table.
Old locus tagEGM11_16290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RRAU01000031.1Sequence record reported by the local genomic context database.
Genomic interval8 298-9 905 nt1 608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 298-10 600 ntGCF_003863055::NZ_RRAU01000031.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003863055::NZ_RRAU01000031.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RRAU01000031.1All displayed genes belong to this local TCS context.
Neighborhood span8 298-10 600 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 298 nt10 600 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGM11_RS16290GCF_003863055#EGM11_RS16290
HKClassicCurrent focus
8 298-9 905 nt · Forward (+)
EGM11_RS16295GCF_003863055#EGM11_RS16295
RROmpR
9 896-10 600 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202670Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1338482
Simplified PFAM architecture for HKOC_1338482
PFAM domain coverage: 286 / 535 aa (53.5%)
1 aa535 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[32-139] | HisKA[304-371] | HATPase_c[416-525]
- Domain count: 3
- Matched identifier: HKOC_1338482
- Positioned domains: DUF4118 32-139 ; HisKA 304-371 ; HATPase_c 416-525
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003863055
AssemblyASM386305v1 · Contighaploid
Genome composition4 073 138 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key