1 Response_reg#1
9-118 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:9:6.84e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGM11_RS09540
Response regulator OmpR family
Clostridioides difficile · GCF_003863055
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003863055#EGM11_RS09540Stable P2CS identifier used across views.
GenomeGCF_003863055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:2.95e-29:232:77:77- Raw architecture: Response_reg:9:6.84e-31:118:111:111#Trans_reg_C:156:2.95e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003863055::NZ_RRAU01000015.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93804-95962Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGM11_09540RefSeq proteinWP_009888460.1
Context group ID
GCF_003863055::NZ_RRAU01000015.1::G00032Context members
EGM11_RS09535EGM11_RS09540
Partner locus tags
EGM11_RS09535EGM11_RS09540
Partner old locus tags
EGM11_09535EGM11_09540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009888460.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q8EBL8Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q8EBL8_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGM11_RS09540Primary locus identifier stored in the genes table.
Old locus tagEGM11_09540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RRAU01000015.1Sequence record reported by the local genomic context database.
Genomic interval95 255-95 962 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 804-95 962 ntGCF_003863055::NZ_RRAU01000015.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003863055::NZ_RRAU01000015.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RRAU01000015.1All displayed genes belong to this local TCS context.
Neighborhood span93 804-95 962 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 804 nt95 962 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGM11_RS09535GCF_003863055#EGM11_RS09535
HKClassic
93 804-95 210 nt · Reverse (-)
EGM11_RS09540GCF_003863055#EGM11_RS09540
RROmpRCurrent focus
95 255-95 962 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0203460Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016364
Simplified PFAM architecture for RROC_1016364
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1016364
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0203460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003863055
AssemblyASM386305v1 · Contighaploid
Genome composition4 073 138 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key