1 Response_reg#1
5-117 aa · 113 aa · 59.8% of protein
Raw token
Response_reg:5:1.06e-21:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGL86_RS03715
Response regulator, unclassified
Clostridioides difficile · GCF_003862975
ClassRRTypeunclassifiedLength189 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003862975#EGL86_RS03715Stable P2CS identifier used across views.
GenomeGCF_003862975Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length189 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 189 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa189 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
137-178 aa · 42 aa · 22.2% of protein
Raw token
HTH_AraC:137:0.0000934:178:42:42- Raw architecture: Response_reg:5:1.06e-21:117:113:111#HTH_AraC:137:0.0000934:178:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003862975::NZ_RQZV01000084.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2187Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGL86_03715RefSeq proteinWP_148093887.1
Context group ID
GCF_003862975::NZ_RQZV01000084.1::G00013Context members
EGL86_RS03715EGL86_RS03720
Partner locus tags
EGL86_RS03715EGL86_RS03720
Partner old locus tags
EGL86_03715EGL86_03720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148093887.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGL86_RS03715Primary locus identifier stored in the genes table.
Old locus tagEGL86_03715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RQZV01000084.1Sequence record reported by the local genomic context database.
Genomic interval1-568 nt568 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-2 187 ntGCF_003862975::NZ_RQZV01000084.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003862975::NZ_RQZV01000084.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RQZV01000084.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 187 nt2 187 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 187 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGL86_RS03715GCF_003862975#EGL86_RS03715
RRunclassifiedCurrent focus
1-568 nt · Reverse (-)
EGL86_RS03720GCF_003862975#EGL86_RS03720
HKClassic
682-2 187 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS11900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1059373
Simplified PFAM architecture for RROC_1059373
PFAM domain coverage: 189 / 234 aa (80.8%)
1 aa234 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-227]
- Domain count: 2
- Matched identifier: RROC_1059373
- Positioned domains: Response_reg 5-116 ; HTH_18 151-227
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS11900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003862975
AssemblyASM386297v1 · Contighaploid
Genome composition4 049 788 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 49 · RR 55CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key