1 Response_reg#1
4-111 aa · 108 aa · 73.5% of protein
Raw token
Response_reg:4:3.49e-32:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGL87_RS05815
Response regulator, CheY family
Clostridioides difficile · GCF_003862965
ClassRRTypeCheYLength147 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003862965#EGL87_RS05815Stable P2CS identifier used across views.
GenomeGCF_003862965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length147 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 147 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa147 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.49e-32:111:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003862965::NZ_RQZW01000024.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12018-12458Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGL87_05815RefSeq proteinWP_148094637.1
Context group ID
GCF_003862965::NZ_RQZW01000024.1::G00023Context members
EGL87_RS05815
Partner locus tags
EGL87_RS05815
Partner old locus tags
EGL87_05815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148094637.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGL87_RS05815Primary locus identifier stored in the genes table.
Old locus tagEGL87_05815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RQZW01000024.1Sequence record reported by the local genomic context database.
Genomic interval12 018-12 458 nt441 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 018-12 458 ntGCF_003862965::NZ_RQZW01000024.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003862965::NZ_RQZW01000024.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RQZW01000024.1All displayed genes belong to this local TCS context.
Neighborhood span12 018-12 458 nt441 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 018 nt12 458 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EGL87_RS05815GCF_003862965#EGL87_RS05815
RRCheYCurrent focus
12 018-12 458 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767197
Simplified PFAM architecture for RROC_1767197
PFAM domain coverage: 182 / 219 aa (83.1%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1767197
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 144-217 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003862965
AssemblyASM386296v1 · Contighaploid
Genome composition4 051 318 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key