1 HisKA#1
84-143 aa · 60 aa · 19.9% of protein
Raw token
HisKA:84:0.00000000065:143:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGL88_RS13650
Histidine kinase, Classic
Clostridioides difficile · GCF_003862945
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003862945#EGL88_RS13650Stable P2CS identifier used across views.
GenomeGCF_003862945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 302 aa (55.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
189-295 aa · 107 aa · 35.4% of protein
Raw token
HATPase_c:189:3.04e-22:295:107:109- Raw architecture: HisKA:84:0.00000000065:143:60:64#HATPase_c:189:3.04e-22:295:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003862945::NZ_RQZX01000059.1::G00040
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-911Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGL88_13650RefSeq proteinWP_074104059.1
Context group ID
GCF_003862945::NZ_RQZX01000059.1::G00040Context members
EGL88_RS13650
Partner locus tags
EGL88_RS13650
Partner old locus tags
EGL88_13650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074104059.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGL88_RS13650Primary locus identifier stored in the genes table.
Old locus tagEGL88_13650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RQZX01000059.1Sequence record reported by the local genomic context database.
Genomic interval1-911 nt911 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-911 ntGCF_003862945::NZ_RQZX01000059.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003862945::NZ_RQZX01000059.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RQZX01000059.1All displayed genes belong to this local TCS context.
Neighborhood span1-911 nt911 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt911 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EGL88_RS13650GCF_003862945#EGL88_RS13650
HKClassicCurrent focus
1-911 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0207205Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2293402
Simplified PFAM architecture for HKOC_2293402
PFAM domain coverage: 169 / 417 aa (40.5%)
1 aa417 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-258] | HATPase_c[305-410]
- Domain count: 2
- Matched identifier: HKOC_2293402
- Positioned domains: HisKA 196-258 ; HATPase_c 305-410
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0207205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003862945
AssemblyASM386294v1 · Contighaploid
Genome composition4 037 177 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key