1 Response_reg#1
4-116 aa · 113 aa · 47.7% of protein
Raw token
Response_reg:4:1.52e-18:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGL90_RS12450
Response regulator LytTR family
Clostridioides difficile · GCF_003862935
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003862935#EGL90_RS12450Stable P2CS identifier used across views.
GenomeGCF_003862935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 237 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
137-228 aa · 92 aa · 38.8% of protein
Raw token
LytTR:137:4.87e-22:228:97:98- Raw architecture: Response_reg:4:1.52e-18:116:116:111#LytTR:137:4.87e-22:228:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003862935::NZ_RQZZ01000029.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span40553-41266Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGL90_12450RefSeq proteinWP_009902266.1
Context group ID
GCF_003862935::NZ_RQZZ01000029.1::G00044Context members
EGL90_RS12450
Partner locus tags
EGL90_RS12450
Partner old locus tags
EGL90_12450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009902266.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QBE1Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QBE1_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGL90_RS12450Primary locus identifier stored in the genes table.
Old locus tagEGL90_12450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RQZZ01000029.1Sequence record reported by the local genomic context database.
Genomic interval40 553-41 266 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 553-41 266 ntGCF_003862935::NZ_RQZZ01000029.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003862935::NZ_RQZZ01000029.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RQZZ01000029.1All displayed genes belong to this local TCS context.
Neighborhood span40 553-41 266 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 553 nt41 266 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EGL90_RS12450GCF_003862935#EGL90_RS12450
RRLytTRCurrent focus
40 553-41 266 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0206205Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961604
Simplified PFAM architecture for RROC_0961604
PFAM domain coverage: 204 / 237 aa (86.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0961604
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0206205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003862935
AssemblyASM386293v1 · Contighaploid
Genome composition4 099 207 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key