1 Response_reg#1
5-112 aa · 108 aa · 48.2% of protein
Raw token
Response_reg:5:1.32e-38:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGL97_RS15775
Response regulator OmpR family
Clostridioides difficile · GCF_003862835
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003862835#EGL97_RS15775Stable P2CS identifier used across views.
GenomeGCF_003862835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:147:5.61e-25:222:77:77- Raw architecture: Response_reg:5:1.32e-38:112:110:111#Trans_reg_C:147:5.61e-25:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003862835::NZ_RRAG01000038.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9639-11461Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGL97_15775RefSeq proteinWP_021363249.1
Context group ID
GCF_003862835::NZ_RRAG01000038.1::G00052Context members
EGL97_RS15775EGL97_RS15780
Partner locus tags
EGL97_RS15775EGL97_RS15780
Partner old locus tags
EGL97_15775EGL97_15780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021363249.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGL97_RS15775Primary locus identifier stored in the genes table.
Old locus tagEGL97_15775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RRAG01000038.1Sequence record reported by the local genomic context database.
Genomic interval9 639-10 313 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 639-11 461 ntGCF_003862835::NZ_RRAG01000038.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003862835::NZ_RRAG01000038.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RRAG01000038.1All displayed genes belong to this local TCS context.
Neighborhood span9 639-11 461 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 639 nt11 461 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGL97_RS15775GCF_003862835#EGL97_RS15775
RROmpRCurrent focus
9 639-10 313 nt · Forward (+)
EGL97_RS15780GCF_003862835#EGL97_RS15780
HKClassic
10 301-11 461 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448805#QKI_RS02880Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1531942
Simplified PFAM architecture for RROC_1531942
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1531942
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000448805#QKI_RS02880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003862835
AssemblyASM386283v1 · Contighaploid
Genome composition4 039 175 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key