1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:5.04e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGM06_RS05340
Response regulator OmpR family
Clostridioides difficile · GCF_003862685
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_003862685#EGM06_RS05340Stable P2CS identifier used across views.
GenomeGCF_003862685Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.96e-22:223:75:77- Raw architecture: Response_reg:5:5.04e-22:114:111:111#Trans_reg_C:150:2.96e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_003862685::NZ_RRAP01000009.1::G00019
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span40816-46541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGM06_05340RefSeq proteinWP_009891737.1
Context group ID
GCF_003862685::NZ_RRAP01000009.1::G00019Context members
EGM06_RS05330EGM06_RS05335EGM06_RS05340EGM06_RS05345EGM06_RS05350
Partner locus tags
EGM06_RS05330EGM06_RS05335EGM06_RS05340EGM06_RS05345EGM06_RS05350
Partner old locus tags
EGM06_05330EGM06_05335EGM06_05340EGM06_05345EGM06_05350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891737.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N6A7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N6A7_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGM06_RS05340Primary locus identifier stored in the genes table.
Old locus tagEGM06_05340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RRAP01000009.1Sequence record reported by the local genomic context database.
Genomic interval43 047-43 727 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 816-46 541 ntGCF_003862685::NZ_RRAP01000009.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003862685::NZ_RRAP01000009.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RRAP01000009.1All displayed genes belong to this local TCS context.
Neighborhood span40 816-46 541 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 816 nt46 541 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
EGM06_RS05330GCF_003862685#EGM06_RS05330
HKClassic
40 816-41 931 nt · Reverse (-)
EGM06_RS05335GCF_003862685#EGM06_RS05335
RROmpR
41 967-42 665 nt · Reverse (-)
EGM06_RS05340GCF_003862685#EGM06_RS05340
RROmpRCurrent focus
43 047-43 727 nt · Reverse (-)
EGM06_RS05345GCF_003862685#EGM06_RS05345
HKClassic
43 777-45 792 nt · Reverse (-)
EGM06_RS05350GCF_003862685#EGM06_RS05350
RROmpR
45 864-46 541 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407941
Simplified PFAM architecture for RROC_1407941
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407941
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003862685
AssemblyASM386268v1 · Contighaploid
Genome composition4 127 337 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key