1 HisKA#1
195-255 aa · 61 aa · 14.8% of protein
Raw token
HisKA:195:0.000000000000186:255:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGM10_RS16990
Histidine kinase, Classic
Clostridioides difficile · GCF_003862635
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003862635#EGM10_RS16990Stable P2CS identifier used across views.
GenomeGCF_003862635Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 413 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
302-407 aa · 106 aa · 25.7% of protein
Raw token
HATPase_c:302:1.45e-25:407:106:109- Raw architecture: HisKA:195:0.000000000000186:255:61:64#HATPase_c:302:1.45e-25:407:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003862635::NZ_RRAT01000036.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61733-63671Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGM10_16970RefSeq proteinWP_003434453.1
Context group ID
GCF_003862635::NZ_RRAT01000036.1::G00058Context members
EGM10_RS16990EGM10_RS16995
Partner locus tags
EGM10_RS16990EGM10_RS16995
Partner old locus tags
EGM10_16970EGM10_16975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003434453.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3HS12Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3HS12_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGM10_RS16990Primary locus identifier stored in the genes table.
Old locus tagEGM10_16970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RRAT01000036.1Sequence record reported by the local genomic context database.
Genomic interval61 733-62 974 nt1 242 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 733-63 671 ntGCF_003862635::NZ_RRAT01000036.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003862635::NZ_RRAT01000036.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RRAT01000036.1All displayed genes belong to this local TCS context.
Neighborhood span61 733-63 671 nt1 939 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 733 nt63 671 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGM10_RS16990GCF_003862635#EGM10_RS16990
HKClassicCurrent focus
61 733-62 974 nt · Reverse (-)
EGM10_RS16995GCF_003862635#EGM10_RS16995
RROmpR
62 985-63 671 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS15735Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2328176
Simplified PFAM architecture for HKOC_2328176
PFAM domain coverage: 172 / 413 aa (41.6%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-255] | HATPase_c[302-410]
- Domain count: 2
- Matched identifier: HKOC_2328176
- Positioned domains: HisKA 193-255 ; HATPase_c 302-410
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS15735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003862635
AssemblyASM386263v1 · Contighaploid
Genome composition4 045 057 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key