1 HisKA#1
46-93 aa · 48 aa · 21.1% of protein
Raw token
HisKA:46:0.00000092:93:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGM13_RS06540
Histidine kinase, Classic
Clostridioides difficile · GCF_003862595
ClassHKTypeClassicLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003862595#EGM13_RS06540Stable P2CS identifier used across views.
GenomeGCF_003862595Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage138 / 228 aa (60.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
139-228 aa · 90 aa · 39.5% of protein
Raw token
HATPase_c:139:1.1e-16:228:90:109- Raw architecture: HisKA:46:0.00000092:93:53:64#HATPase_c:139:1.1e-16:228:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003862595::NZ_RRAW01000010.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1616Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEGM13_06540RefSeq proteinWP_236880443.1
Context group ID
GCF_003862595::NZ_RRAW01000010.1::G00023Context members
EGM13_RS06540EGM13_RS06545
Partner locus tags
EGM13_RS06540EGM13_RS06545
Partner old locus tags
EGM13_06540EGM13_06545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236880443.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGM13_RS06540Primary locus identifier stored in the genes table.
Old locus tagEGM13_06540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RRAW01000010.1Sequence record reported by the local genomic context database.
Genomic interval1-683 nt683 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 616 ntGCF_003862595::NZ_RRAW01000010.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003862595::NZ_RRAW01000010.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RRAW01000010.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 616 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 616 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGM13_RS06540GCF_003862595#EGM13_RS06540
HKClassicCurrent focus
1-683 nt · Reverse (-)
EGM13_RS06545GCF_003862595#EGM13_RS06545
RROmpR
924-1 616 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0214845Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2916032
Simplified PFAM architecture for HKOC_2916032
PFAM domain coverage: 109 / 257 aa (42.4%)
1 aa257 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[140-248]
- Domain count: 1
- Matched identifier: HKOC_2916032
- Positioned domains: HATPase_c 140-248
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0214845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003862595
AssemblyASM386259v1 · Contighaploid
Genome composition4 071 580 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key