1 HAMP#1
181-251 aa · 71 aa · 14.8% of protein
Raw token
HAMP:181:0.0000000000000901:251:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5U84_RS07425
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_003790385
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003790385#B5U84_RS07425Stable P2CS identifier used across views.
GenomeGCF_003790385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 479 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-321 aa · 67 aa · 14.0% of protein
Raw token
HisKA:255:0.0000000000723:321:67:643 HATPase_c#3
376-476 aa · 101 aa · 21.1% of protein
Raw token
HATPase_c:376:0.0000000000505:476:101:109- Raw architecture: HAMP:181:0.0000000000000901:251:71:69#HisKA:255:0.0000000000723:321:67:64#HATPase_c:376:0.0000000000505:476:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003790385::NZ_RJZG01000005.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209740-211841Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5U84_07425RefSeq proteinWP_047272244.1
Context group ID
GCF_003790385::NZ_RJZG01000005.1::G00017Context members
B5U84_RS07420B5U84_RS07425
Partner locus tags
B5U84_RS07420B5U84_RS07425
Partner old locus tags
B5U84_07420B5U84_07425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_047272244.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5U84_RS07425Primary locus identifier stored in the genes table.
Old locus tagB5U84_07425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RJZG01000005.1Sequence record reported by the local genomic context database.
Genomic interval210 402-211 841 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span209 740-211 841 ntGCF_003790385::NZ_RJZG01000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003790385::NZ_RJZG01000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RJZG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span209 740-211 841 nt2 102 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 740 nt211 841 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5U84_RS07420GCF_003790385#B5U84_RS07420
RROmpR
209 740-210 405 nt · Forward (+)
B5U84_RS07425GCF_003790385#B5U84_RS07425
HKClassicCurrent focus
210 402-211 841 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001020245#A0008_RS07485Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1629013
Simplified PFAM architecture for HKOC_1629013
PFAM domain coverage: 220 / 479 aa (45.9%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-250] | HisKA[256-321] | HATPase_c[374-475]
- Domain count: 3
- Matched identifier: HKOC_1629013
- Positioned domains: HAMP 199-250 ; HisKA 256-321 ; HATPase_c 374-475
Cluster members and taxonomy
Representative gene: GCF_001020245#A0008_RS07485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_003790385
AssemblyASM379038v1 · Contighaploid
Genome composition2 281 719 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key