1 Response_reg#1
13-124 aa · 112 aa · 50.2% of protein
Raw token
Response_reg:13:5.49e-28:124:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5U84_RS04265
Response regulator NarL family
Bifidobacterium bifidum · GCF_003790385
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003790385#B5U84_RS04265Stable P2CS identifier used across views.
GenomeGCF_003790385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 223 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
162-218 aa · 57 aa · 25.6% of protein
Raw token
HTH_LUXR:162:0.00000000000000176:218:58:58- Raw architecture: Response_reg:13:5.49e-28:124:112:111#HTH_LUXR:162:0.00000000000000176:218:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003790385::NZ_RJZG01000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80888-82995Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5U84_04265RefSeq proteinWP_003813814.1
Context group ID
GCF_003790385::NZ_RJZG01000003.1::G00014Context members
B5U84_RS04265B5U84_RS04270
Partner locus tags
B5U84_RS04265B5U84_RS04270
Partner old locus tags
B5U84_04265B5U84_04270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003813814.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3EB66Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3EB66_BIFBPDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5U84_RS04265Primary locus identifier stored in the genes table.
Old locus tagB5U84_04265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RJZG01000003.1Sequence record reported by the local genomic context database.
Genomic interval80 888-81 559 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 888-82 995 ntGCF_003790385::NZ_RJZG01000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003790385::NZ_RJZG01000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RJZG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span80 888-82 995 nt2 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 888 nt82 995 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5U84_RS04265GCF_003790385#B5U84_RS04265
RRNarLCurrent focus
80 888-81 559 nt · Reverse (-)
B5U84_RS04270GCF_003790385#B5U84_RS04270
HKClassic
81 556-82 995 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155395#BBNG_RS06095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587384
Simplified PFAM architecture for RROC_1587384
PFAM domain coverage: 165 / 223 aa (74.0%)
1 aa223 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[11-124] | Sigma70_r4_2[156-206]
- Domain count: 2
- Matched identifier: RROC_1587384
- Positioned domains: Response_reg 11-124 ; Response_reg 11-124 ; Sigma70_r4_2 156-206 ; Sigma70_r4_2 156-206
Cluster members and taxonomy
Representative gene: GCF_000155395#BBNG_RS06095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_003790385
AssemblyASM379038v1 · Contighaploid
Genome composition2 281 719 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key