1 H_kinase_N#1
9-145 aa · 137 aa · 27.7% of protein
Raw token
H_kinase_N:9:9.01e-51:145:138:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5U84_RS00320
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_003790385
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003790385#B5U84_RS00320Stable P2CS identifier used across views.
GenomeGCF_003790385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage411 / 495 aa (83.0%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation4 items
2 PAS_4#2
173-278 aa · 106 aa · 21.4% of protein
Raw token
PAS_4:173:0.00000000485:278:111:1103 HisKA_2#3
292-361 aa · 70 aa · 14.1% of protein
Raw token
HisKA_2:292:1.08e-29:361:71:764 HATPase_c#4
388-485 aa · 98 aa · 19.8% of protein
Raw token
HATPase_c:388:0.00000000000000395:485:107:109- Raw architecture: H_kinase_N:9:9.01e-51:145:138:139#PAS_4:173:0.00000000485:278:111:110#HisKA_2:292:1.08e-29:361:71:76#HATPase_c:388:0.00000000000000395:485:107:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003790385::NZ_RJZG01000001.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span72451-73938Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5U84_00325RefSeq proteinWP_003822258.1
Context group ID
GCF_003790385::NZ_RJZG01000001.1::G00005Context members
B5U84_RS00320
Partner locus tags
B5U84_RS00320
Partner old locus tags
B5U84_00325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003822258.1Primary protein accession used for annex mappings.
UniProt accessionA0A151CC92Primary UniProt accession resolved in the annex database.
UniProt IDA0A151CC92_BIFBIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5U84_RS00320Primary locus identifier stored in the genes table.
Old locus tagB5U84_00325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RJZG01000001.1Sequence record reported by the local genomic context database.
Genomic interval72 451-73 938 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 451-73 938 ntGCF_003790385::NZ_RJZG01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003790385::NZ_RJZG01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RJZG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span72 451-73 938 nt1 488 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 451 nt73 938 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5U84_RS00320GCF_003790385#B5U84_RS00320
HKClassicCurrent focus
72 451-73 938 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155395#BBNG_RS03170Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504293
Simplified PFAM architecture for HKOC_1504293
PFAM domain coverage: 414 / 495 aa (83.6%)
1 aa495 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[172-278] | HisKA_2[292-361] | HATPase_c[388-487]
- Domain count: 4
- Matched identifier: HKOC_1504293
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 172-278 ; HisKA_2 292-361 ; HATPase_c 388-487
Cluster members and taxonomy
Representative gene: GCF_000155395#BBNG_RS03170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_003790385
AssemblyASM379038v1 · Contighaploid
Genome composition2 281 719 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key