1 Response_reg#1
4-121 aa · 118 aa · 53.2% of protein
Raw token
Response_reg:4:4.82e-28:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5U78_RS05190
Response regulator NarL family
Bifidobacterium longum · GCF_003790375
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003790375#B5U78_RS05190Stable P2CS identifier used across views.
GenomeGCF_003790375Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 222 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-215 aa · 56 aa · 25.2% of protein
Raw token
HTH_LUXR:160:5.31e-16:215:56:58- Raw architecture: Response_reg:4:4.82e-28:121:118:111#HTH_LUXR:160:5.31e-16:215:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003790375::NZ_RJZF01000004.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span42108-42776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5U78_05185RefSeq proteinWP_124226487.1
Context group ID
GCF_003790375::NZ_RJZF01000004.1::G00010Context members
B5U78_RS05190
Partner locus tags
B5U78_RS05190
Partner old locus tags
B5U78_05185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_124226487.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5U78_RS05190Primary locus identifier stored in the genes table.
Old locus tagB5U78_05185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RJZF01000004.1Sequence record reported by the local genomic context database.
Genomic interval42 108-42 776 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 108-42 776 ntGCF_003790375::NZ_RJZF01000004.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003790375::NZ_RJZF01000004.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RJZF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span42 108-42 776 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 108 nt42 776 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5U78_RS05190GCF_003790375#B5U78_RS05190
RRNarLCurrent focus
42 108-42 776 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003790375#B5U78_RS05190The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1647452
Simplified PFAM architecture for RROC_1647452
PFAM domain coverage: 171 / 222 aa (77.0%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[162-214]
- Domain count: 2
- Matched identifier: RROC_1647452
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; GerE 162-214 ; GerE 162-214
Cluster members and taxonomy
Representative gene: GCF_003790375#B5U78_RS05190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003790375
AssemblyASM379037v1 · Contighaploid
Genome composition2 448 844 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 9 · RR 11CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key