1 Response_reg#1
3-113 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:3:5.22e-41:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCY92_RS07880
Response regulator OmpR family
Bacillus wiedmannii · GCF_003610835
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003610835#BCY92_RS07880Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:4.7e-31:220:77:77- Raw architecture: Response_reg:3:5.22e-41:113:111:111#Trans_reg_C:145:4.7e-31:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003610835::NZ_MCAT01000001.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1528754-1530798Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCY92_07590RefSeq proteinWP_076538755.1
Context group ID
GCF_003610835::NZ_MCAT01000001.1::G00022Context members
BCY92_RS07880BCY92_RS07885
Partner locus tags
BCY92_RS07880BCY92_RS07885
Partner old locus tags
BCY92_07590BCY92_07595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_076538755.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCY92_RS07880Primary locus identifier stored in the genes table.
Old locus tagBCY92_07590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MCAT01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 528 754-1 529 428 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 528 754-1 530 798 ntGCF_003610835::NZ_MCAT01000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003610835::NZ_MCAT01000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MCAT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 528 754-1 530 798 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 528 754 nt1 530 798 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCY92_RS07880GCF_003610835#BCY92_RS07880
RROmpRCurrent focus
1 528 754-1 529 428 nt · Forward (+)
BCY92_RS07885GCF_003610835#BCY92_RS07885
HKClassic
1 529 425-1 530 798 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003610835#BCY92_RS07880The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543783
Simplified PFAM architecture for RROC_1543783
PFAM domain coverage: 186 / 224 aa (83.0%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1543783
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_003610835#BCY92_RS07880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_003610835
AssemblyASM361083v1 · Scaffoldhaploid
Genome composition5 302 495 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key