1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:1.05e-16:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCY92_RS06220
Histidine kinase, Classic
Bacillus wiedmannii · GCF_003610835
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003610835#BCY92_RS06220Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 458 aa (47.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.000000000005:303:61:643 HATPase_c#3
349-437 aa · 89 aa · 19.4% of protein
Raw token
HATPase_c:349:6.13e-19:437:92:109- Raw architecture: HAMP:165:1.05e-16:232:68:69#HisKA:244:0.000000000005:303:61:64#HATPase_c:349:6.13e-19:437:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003610835::NZ_MCAT01000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1209615-1211631Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCY92_06020RefSeq proteinWP_120340947.1
Context group ID
GCF_003610835::NZ_MCAT01000001.1::G00017Context members
BCY92_RS06220BCY92_RS06225
Partner locus tags
BCY92_RS06220BCY92_RS06225
Partner old locus tags
BCY92_06020BCY92_06025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_120340947.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCY92_RS06220Primary locus identifier stored in the genes table.
Old locus tagBCY92_06020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MCAT01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 209 615-1 210 991 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 209 615-1 211 631 ntGCF_003610835::NZ_MCAT01000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003610835::NZ_MCAT01000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MCAT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 209 615-1 211 631 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 209 615 nt1 211 631 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCY92_RS06220GCF_003610835#BCY92_RS06220
HKClassicCurrent focus
1 209 615-1 210 991 nt · Reverse (-)
BCY92_RS06225GCF_003610835#BCY92_RS06225
RROmpR
1 210 984-1 211 631 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003610835#BCY92_RS06220The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1862620
Simplified PFAM architecture for HKOC_1862620
PFAM domain coverage: 214 / 458 aa (46.7%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-232] | HisKA[245-303] | HATPase_c[350-452]
- Domain count: 3
- Matched identifier: HKOC_1862620
- Positioned domains: HAMP 181-232 ; HisKA 245-303 ; HATPase_c 350-452
Cluster members and taxonomy
Representative gene: GCF_003610835#BCY92_RS06220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_003610835
AssemblyASM361083v1 · Scaffoldhaploid
Genome composition5 302 495 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key