1 HAMP#1
158-229 aa · 72 aa · 15.8% of protein
Raw token
HAMP:158:0.000000000326:229:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCY92_RS03010
Histidine kinase, Classic
Bacillus wiedmannii · GCF_003610835
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003610835#BCY92_RS03010Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 455 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-300 aa · 68 aa · 14.9% of protein
Raw token
HisKA:233:0.0000000000000103:300:68:643 HATPase_c#3
343-449 aa · 107 aa · 23.5% of protein
Raw token
HATPase_c:343:8.97e-31:449:108:109- Raw architecture: HAMP:158:0.000000000326:229:72:69#HisKA:233:0.0000000000000103:300:68:64#HATPase_c:343:8.97e-31:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003610835::NZ_MCAT01000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span595867-597921Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCY92_02935RefSeq proteinWP_120340691.1
Context group ID
GCF_003610835::NZ_MCAT01000001.1::G00009Context members
BCY92_RS03005BCY92_RS03010
Partner locus tags
BCY92_RS03005BCY92_RS03010
Partner old locus tags
BCY92_02930BCY92_02935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_120340691.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCY92_RS03010Primary locus identifier stored in the genes table.
Old locus tagBCY92_02935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MCAT01000001.1Sequence record reported by the local genomic context database.
Genomic interval596 554-597 921 nt1 368 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span595 867-597 921 ntGCF_003610835::NZ_MCAT01000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003610835::NZ_MCAT01000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MCAT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span595 867-597 921 nt2 055 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
595 867 nt597 921 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCY92_RS03005GCF_003610835#BCY92_RS03005
RROmpR
595 867-596 550 nt · Forward (+)
BCY92_RS03010GCF_003610835#BCY92_RS03010
HKClassicCurrent focus
596 554-597 921 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003610835#BCY92_RS03010The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1902627
Simplified PFAM architecture for HKOC_1902627
PFAM domain coverage: 346 / 455 aa (76.0%)
1 aa455 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[30-151] | HAMP[176-228] | HisKA[234-297] | HATPase_c[343-449]
- Domain count: 4
- Matched identifier: HKOC_1902627
- Positioned domains: ArlS_N 30-151 ; HAMP 176-228 ; HisKA 234-297 ; HATPase_c 343-449
Cluster members and taxonomy
Representative gene: GCF_003610835#BCY92_RS03010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_003610835
AssemblyASM361083v1 · Scaffoldhaploid
Genome composition5 302 495 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key