1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:4.87e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCY92_RS01065
Response regulator NarL family
Bacillus wiedmannii · GCF_003610835
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003610835#BCY92_RS01065Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 212 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-205 aa · 57 aa · 26.9% of protein
Raw token
HTH_LUXR:149:1.07e-18:205:57:58- Raw architecture: Response_reg:5:4.87e-29:116:113:111#HTH_LUXR:149:1.07e-18:205:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003610835::NZ_MCAT01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span199799-201542Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCY92_01040RefSeq proteinWP_076536627.1
Context group ID
GCF_003610835::NZ_MCAT01000001.1::G00003Context members
BCY92_RS01065BCY92_RS01070
Partner locus tags
BCY92_RS01065BCY92_RS01070
Partner old locus tags
BCY92_01040BCY92_01045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_076536627.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCY92_RS01065Primary locus identifier stored in the genes table.
Old locus tagBCY92_01040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MCAT01000001.1Sequence record reported by the local genomic context database.
Genomic interval199 799-200 437 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span199 799-201 542 ntGCF_003610835::NZ_MCAT01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003610835::NZ_MCAT01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MCAT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span199 799-201 542 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
199 799 nt201 542 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCY92_RS01065GCF_003610835#BCY92_RS01065
RRNarLCurrent focus
199 799-200 437 nt · Forward (+)
BCY92_RS01070GCF_003610835#BCY92_RS01070
HKClassic
200 442-201 542 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003610835#BCY92_RS01065The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1990469
Simplified PFAM architecture for RROC_1990469
PFAM domain coverage: 166 / 212 aa (78.3%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[152-205]
- Domain count: 2
- Matched identifier: RROC_1990469
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 152-205 ; GerE 152-205
Cluster members and taxonomy
Representative gene: GCF_003610835#BCY92_RS01065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_003610835
AssemblyASM361083v1 · Scaffoldhaploid
Genome composition5 302 495 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key