1 HisKA#1
19-81 aa · 63 aa · 26.4% of protein
Raw token
HisKA:19:0.0000000725:81:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA418_RS09355
Histidine kinase, Classic
Clostridioides difficile · GCF_003597875
ClassHKTypeClassicLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003597875#DA418_RS09355Stable P2CS identifier used across views.
GenomeGCF_003597875Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 239 aa (68.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
133-232 aa · 100 aa · 41.8% of protein
Raw token
HATPase_c:133:6.51e-23:232:100:109- Raw architecture: HisKA:19:0.0000000725:81:63:64#HATPase_c:133:6.51e-23:232:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003597875::NZ_CP028524.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1983016-1984596Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA418_09365RefSeq proteinWP_021399326.1
Context group ID
GCF_003597875::NZ_CP028524.1::G00034Context members
DA418_RS09355DA418_RS09360
Partner locus tags
DA418_RS09355DA418_RS09360
Partner old locus tags
DA418_09365DA418_09370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021399326.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA418_RS09355Primary locus identifier stored in the genes table.
Old locus tagDA418_09365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP028524.1Sequence record reported by the local genomic context database.
Genomic interval1 983 016-1 983 735 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 983 016-1 984 596 ntGCF_003597875::NZ_CP028524.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003597875::NZ_CP028524.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP028524.1All displayed genes belong to this local TCS context.
Neighborhood span1 983 016-1 984 596 nt1 581 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 983 016 nt1 984 596 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA418_RS09355GCF_003597875#DA418_RS09355
HKClassicCurrent focus
1 983 016-1 983 735 nt · Reverse (-)
DA418_RS09360GCF_003597875#DA418_RS09360
RROmpR
1 983 925-1 984 596 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033840375#SIK50_RS12330Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2883601
Simplified PFAM architecture for HKOC_2883601
PFAM domain coverage: 165 / 304 aa (54.3%)
1 aa304 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[84-146] | HATPase_c[197-298]
- Domain count: 2
- Matched identifier: HKOC_2883601
- Positioned domains: HisKA 84-146 ; HATPase_c 197-298
Cluster members and taxonomy
Representative gene: GCF_033840375#SIK50_RS12330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003597875
AssemblyASM359787v1 · Chromosomehaploid
Genome composition4 144 005 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key