1 Response_reg#1
32-116 aa · 85 aa · 35.9% of protein
Raw token
Response_reg:32:1.57e-16:116:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA418_RS00385
Response regulator LytTR family
Clostridioides difficile · GCF_003597875
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003597875#DA418_RS00385Stable P2CS identifier used across views.
GenomeGCF_003597875Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 237 aa (75.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
137-229 aa · 93 aa · 39.2% of protein
Raw token
LytTR:137:5.2e-22:229:97:98- Raw architecture: Response_reg:32:1.57e-16:116:88:111#LytTR:137:5.2e-22:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003597875::NZ_CP028524.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span79765-80478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA418_00385RefSeq proteinWP_011860653.1
Context group ID
GCF_003597875::NZ_CP028524.1::G00001Context members
DA418_RS00385
Partner locus tags
DA418_RS00385
Partner old locus tags
DA418_00385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011860653.1Primary protein accession used for annex mappings.
UniProt accessionQ18CQ0Primary UniProt accession resolved in the annex database.
UniProt IDQ18CQ0_CLOD6Display identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA418_RS00385Primary locus identifier stored in the genes table.
Old locus tagDA418_00385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP028524.1Sequence record reported by the local genomic context database.
Genomic interval79 765-80 478 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 765-80 478 ntGCF_003597875::NZ_CP028524.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003597875::NZ_CP028524.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP028524.1All displayed genes belong to this local TCS context.
Neighborhood span79 765-80 478 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 765 nt80 478 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DA418_RS00385GCF_003597875#DA418_RS00385
RRLytTRCurrent focus
79 765-80 478 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030250675#QQO68_RS05835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0781506
Simplified PFAM architecture for RROC_0781506
PFAM domain coverage: 188 / 246 aa (76.4%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[30-125] | LytTR[146-237]
- Domain count: 2
- Matched identifier: RROC_0781506
- Positioned domains: Response_reg 30-125 ; LytTR 146-237
Cluster members and taxonomy
Representative gene: GCF_030250675#QQO68_RS05835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003597875
AssemblyASM359787v1 · Chromosomehaploid
Genome composition4 144 005 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key