1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:5.04e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA432_RS16825
Response regulator OmpR family
Clostridioides difficile · GCF_003597835
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_003597835#DA432_RS16825Stable P2CS identifier used across views.
GenomeGCF_003597835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.96e-22:223:75:77- Raw architecture: Response_reg:5:5.04e-22:114:111:111#Trans_reg_C:150:2.96e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_003597835::NZ_CP028528.1::G00052
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3593582-3599307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA432_16830RefSeq proteinWP_009891737.1
Context group ID
GCF_003597835::NZ_CP028528.1::G00052Context members
DA432_RS16815DA432_RS16820DA432_RS16825DA432_RS16830DA432_RS16835
Partner locus tags
DA432_RS16815DA432_RS16820DA432_RS16825DA432_RS16830DA432_RS16835
Partner old locus tags
DA432_16820DA432_16825DA432_16830DA432_16835DA432_16840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891737.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N6A7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N6A7_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA432_RS16825Primary locus identifier stored in the genes table.
Old locus tagDA432_16830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP028528.1Sequence record reported by the local genomic context database.
Genomic interval3 595 813-3 596 493 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 593 582-3 599 307 ntGCF_003597835::NZ_CP028528.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003597835::NZ_CP028528.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP028528.1All displayed genes belong to this local TCS context.
Neighborhood span3 593 582-3 599 307 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 593 582 nt3 599 307 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
DA432_RS16815GCF_003597835#DA432_RS16815
HKClassic
3 593 582-3 594 697 nt · Reverse (-)
DA432_RS16820GCF_003597835#DA432_RS16820
RROmpR
3 594 733-3 595 431 nt · Reverse (-)
DA432_RS16825GCF_003597835#DA432_RS16825
RROmpRCurrent focus
3 595 813-3 596 493 nt · Reverse (-)
DA432_RS16830GCF_003597835#DA432_RS16830
HKClassic
3 596 543-3 598 558 nt · Reverse (-)
DA432_RS16835GCF_003597835#DA432_RS16835
RROmpR
3 598 630-3 599 307 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407941
Simplified PFAM architecture for RROC_1407941
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407941
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003597835
AssemblyASM359783v1 · Chromosomehaploid
Genome composition4 119 431 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key