1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:2.34e-29:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA430_RS07560
Response regulator OmpR family
Clostridioides difficile · GCF_003597815
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003597815#DA430_RS07560Stable P2CS identifier used across views.
GenomeGCF_003597815Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:2.38e-30:232:78:77- Raw architecture: Response_reg:12:2.34e-29:120:110:111#Trans_reg_C:155:2.38e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003597815::NZ_CP028527.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1561409-1563365Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA430_07565RefSeq proteinWP_009889278.1
Context group ID
GCF_003597815::NZ_CP028527.1::G00022Context members
DA430_RS07560DA430_RS07565
Partner locus tags
DA430_RS07560DA430_RS07565
Partner old locus tags
DA430_07565DA430_07570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009889278.1Primary protein accession used for annex mappings.
UniProt accessionA0A9R0BJT3Primary UniProt accession resolved in the annex database.
UniProt IDA0A9R0BJT3_CLODRDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA430_RS07560Primary locus identifier stored in the genes table.
Old locus tagDA430_07565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP028527.1Sequence record reported by the local genomic context database.
Genomic interval1 561 409-1 562 134 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 561 409-1 563 365 ntGCF_003597815::NZ_CP028527.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003597815::NZ_CP028527.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP028527.1All displayed genes belong to this local TCS context.
Neighborhood span1 561 409-1 563 365 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 561 409 nt1 563 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA430_RS07560GCF_003597815#DA430_RS07560
RROmpRCurrent focus
1 561 409-1 562 134 nt · Forward (+)
DA430_RS07565GCF_003597815#DA430_RS07565
HKClassic
1 562 112-1 563 365 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000027105#CDR20291_RS07180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862707
Simplified PFAM architecture for RROC_0862707
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862707
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000027105#CDR20291_RS07180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003597815
AssemblyASM359781v1 · Chromosomehaploid
Genome composition4 174 373 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key