1 Response_reg#1
21-127 aa · 107 aa · 45.9% of protein
Raw token
Response_reg:21:0.0000000000388:127:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DER28_RS07455
Response regulator NarL family
Bifidobacterium sp. · GCF_003534355
ClassRRTypeNarLLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003534355#DER28_RS07455Stable P2CS identifier used across views.
GenomeGCF_003534355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 233 aa (69.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
172-226 aa · 55 aa · 23.6% of protein
Raw token
HTH_LUXR:172:1.62e-18:226:55:58- Raw architecture: Response_reg:21:0.0000000000388:127:108:111#HTH_LUXR:172:1.62e-18:226:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003534355::NZ_DPDO01000023.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span42700-43401Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDER28_07480RefSeq proteinWP_236837523.1
Context group ID
GCF_003534355::NZ_DPDO01000023.1::G00010Context members
DER28_RS07455
Partner locus tags
DER28_RS07455
Partner old locus tags
DER28_07480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236837523.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDER28_RS07455Primary locus identifier stored in the genes table.
Old locus tagDER28_07480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DPDO01000023.1Sequence record reported by the local genomic context database.
Genomic interval42 700-43 401 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 700-43 401 ntGCF_003534355::NZ_DPDO01000023.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003534355::NZ_DPDO01000023.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DPDO01000023.1All displayed genes belong to this local TCS context.
Neighborhood span42 700-43 401 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 700 nt43 401 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DER28_RS07455GCF_003534355#DER28_RS07455
RRNarLCurrent focus
42 700-43 401 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002107925#B0042_RS02250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1087598
Simplified PFAM architecture for RROC_1087598
PFAM domain coverage: 163 / 233 aa (70.0%)
1 aa233 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[21-129] | GerE[172-225]
- Domain count: 2
- Matched identifier: RROC_1087598
- Positioned domains: Response_reg 21-129 ; Response_reg 21-129 ; GerE 172-225 ; GerE 172-225
Cluster members and taxonomy
Representative gene: GCF_002107925#B0042_RS02250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_003534355
AssemblyASM353435v1 · Scaffoldhaploid
Genome composition2 232 033 bp · 59,5% GCBifidobacterium sp.
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key