1 HisKA_3#1
31-93 aa · 63 aa · 9.6% of protein
Raw token
HisKA_3:31:5.16e-17:93:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DER28_RS03805
Histidine kinase, Classic
Bifidobacterium sp. · GCF_003534355
ClassHKTypeClassicLength658 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003534355#DER28_RS03805Stable P2CS identifier used across views.
GenomeGCF_003534355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length658 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 658 aa (22.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa658 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
142-228 aa · 87 aa · 13.2% of protein
Raw token
HATPase_c:142:0.00000000000873:228:104:109- Raw architecture: HisKA_3:31:5.16e-17:93:63:68#HATPase_c:142:0.00000000000873:228:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003534355::NZ_DPDO01000013.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2210-5011Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDER28_03840RefSeq proteinWP_287025475.1
Context group ID
GCF_003534355::NZ_DPDO01000013.1::G00004Context members
DER28_RS03800DER28_RS03805
Partner locus tags
DER28_RS03800DER28_RS03805
Partner old locus tags
DER28_03835DER28_03840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287025475.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDER28_RS03805Primary locus identifier stored in the genes table.
Old locus tagDER28_03840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DPDO01000013.1Sequence record reported by the local genomic context database.
Genomic interval3 035-5 011 nt1 977 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 210-5 011 ntGCF_003534355::NZ_DPDO01000013.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003534355::NZ_DPDO01000013.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DPDO01000013.1All displayed genes belong to this local TCS context.
Neighborhood span2 210-5 011 nt2 802 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 210 nt5 011 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DER28_RS03800GCF_003534355#DER28_RS03800
RRNarL
2 210-2 959 nt · Reverse (-)
DER28_RS03805GCF_003534355#DER28_RS03805
HKClassicCurrent focus
3 035-5 011 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003534355#DER28_RS03805The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c + DUF71343 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0877036
Simplified PFAM architecture for HKOC_0877036
PFAM domain coverage: 286 / 658 aa (43.5%)
1 aa658 aa
HisKA_3HATPase_cDUF7134
- Simplified architecture: HisKA_3 + HATPase_c + DUF7134
- Raw architecture: HisKA_3[31-93] | HATPase_c[142-229] | DUF7134[343-477]
- Domain count: 3
- Matched identifier: HKOC_0877036
- Positioned domains: HisKA_3 31-93 ; HATPase_c 142-229 ; DUF7134 343-477
Cluster members and taxonomy
Representative gene: GCF_003534355#DER28_RS03805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_003534355
AssemblyASM353435v1 · Scaffoldhaploid
Genome composition2 232 033 bp · 59,5% GCBifidobacterium sp.
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key