1 HisKA#1
88-154 aa · 67 aa · 21.4% of protein
Raw token
HisKA:88:0.000000000000215:154:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28668_RS19060
Histidine kinase, Classic
Clostridioides difficile · GCF_003490105
ClassHKTypeClassicLength313 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003490105#CDIF28668_RS19060Stable P2CS identifier used across views.
GenomeGCF_003490105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 313 aa (56.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-308 aa · 109 aa · 34.8% of protein
Raw token
HATPase_c:200:8.75e-27:308:110:109- Raw architecture: HisKA:88:0.000000000000215:154:67:64#HATPase_c:200:8.75e-27:308:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003490105::NZ_CP012309.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4131118-4132981Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28668_03806RefSeq proteinWP_021362088.1
Context group ID
GCF_003490105::NZ_CP012309.1::G00058Context members
CDIF28668_RS19060CDIF28668_RS19065
Partner locus tags
CDIF28668_RS19060CDIF28668_RS19065
Partner old locus tags
CDIF28668_03806CDIF28668_03807
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021362088.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28668_RS19060Primary locus identifier stored in the genes table.
Old locus tagCDIF28668_03806Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012309.1Sequence record reported by the local genomic context database.
Genomic interval4 131 118-4 132 059 nt942 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 131 118-4 132 981 ntGCF_003490105::NZ_CP012309.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003490105::NZ_CP012309.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012309.1All displayed genes belong to this local TCS context.
Neighborhood span4 131 118-4 132 981 nt1 864 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 131 118 nt4 132 981 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF28668_RS19060GCF_003490105#CDIF28668_RS19060
HKClassicCurrent focus
4 131 118-4 132 059 nt · Reverse (-)
CDIF28668_RS19065GCF_003490105#CDIF28668_RS19065
RROmpR
4 132 289-4 132 981 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302905#BGV10_RS07395Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2471040
Simplified PFAM architecture for HKOC_2471040
PFAM domain coverage: 175 / 397 aa (44.1%)
1 aa397 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-237] | HATPase_c[285-393]
- Domain count: 2
- Matched identifier: HKOC_2471040
- Positioned domains: HisKA 172-237 ; HATPase_c 285-393
Cluster members and taxonomy
Representative gene: GCF_002302905#BGV10_RS07395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003490105
AssemblyASM349010v1 · Complete Genomehaploid
Genome composition4 214 812 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key