1 HisKA#1
46-93 aa · 48 aa · 18.7% of protein
Raw token
HisKA:46:0.000000575:93:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28668_RS15730
Histidine kinase, Classic
Clostridioides difficile · GCF_003490105
ClassHKTypeClassicLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003490105#CDIF28668_RS15730Stable P2CS identifier used across views.
GenomeGCF_003490105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 257 aa (61.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
139-247 aa · 109 aa · 42.4% of protein
Raw token
HATPase_c:139:3.1e-22:247:109:109- Raw architecture: HisKA:46:0.000000575:93:53:64#HATPase_c:139:3.1e-22:247:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003490105::NZ_CP012309.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3378740-3380446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28668_03129RefSeq proteinWP_330425481.1
Context group ID
GCF_003490105::NZ_CP012309.1::G00049Context members
CDIF28668_RS15730CDIF28668_RS15735
Partner locus tags
CDIF28668_RS15730CDIF28668_RS15735
Partner old locus tags
CDIF28668_03129CDIF28668_03130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330425481.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28668_RS15730Primary locus identifier stored in the genes table.
Old locus tagCDIF28668_03129Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012309.1Sequence record reported by the local genomic context database.
Genomic interval3 378 740-3 379 513 nt774 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 378 740-3 380 446 ntGCF_003490105::NZ_CP012309.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003490105::NZ_CP012309.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012309.1All displayed genes belong to this local TCS context.
Neighborhood span3 378 740-3 380 446 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 378 740 nt3 380 446 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF28668_RS15730GCF_003490105#CDIF28668_RS15730
HKClassicCurrent focus
3 378 740-3 379 513 nt · Reverse (-)
CDIF28668_RS15735GCF_003490105#CDIF28668_RS15735
RROmpR
3 379 754-3 380 446 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003490105#CDIF28668_RS15730The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2916170
Simplified PFAM architecture for HKOC_2916170
PFAM domain coverage: 109 / 257 aa (42.4%)
1 aa257 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[140-248]
- Domain count: 1
- Matched identifier: HKOC_2916170
- Positioned domains: HATPase_c 140-248
Cluster members and taxonomy
Representative gene: GCF_003490105#CDIF28668_RS15730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003490105
AssemblyASM349010v1 · Complete Genomehaploid
Genome composition4 214 812 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key