1 Response_reg#1
86-147 aa · 62 aa · 39.5% of protein
Raw token
Response_reg:86:0.0000000000000534:147:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB02_RS11540
Response regulator, unclassified
Blautia sp. OF11-22 · GCF_003482385
ClassRRTypeunclassifiedLength157 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482385#DXB02_RS11540Stable P2CS identifier used across views.
GenomeGCF_003482385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length157 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage62 / 157 aa (39.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa157 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:86:0.0000000000000534:147:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482385::NZ_QUMA01000015.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29784-30257Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB02_11540RefSeq proteinWP_330427059.1
Context group ID
GCF_003482385::NZ_QUMA01000015.1::G00018Context members
DXB02_RS11540
Partner locus tags
DXB02_RS11540
Partner old locus tags
DXB02_11540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330427059.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB02_RS11540Primary locus identifier stored in the genes table.
Old locus tagDXB02_11540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMA01000015.1Sequence record reported by the local genomic context database.
Genomic interval29 784-30 257 nt474 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 784-30 257 ntGCF_003482385::NZ_QUMA01000015.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482385::NZ_QUMA01000015.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMA01000015.1All displayed genes belong to this local TCS context.
Neighborhood span29 784-30 257 nt474 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 784 nt30 257 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB02_RS11540GCF_003482385#DXB02_RS11540
RRunclassifiedCurrent focus
29 784-30 257 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482385#DXB02_RS11540The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2212443
Simplified PFAM architecture for RROC_2212443
PFAM domain coverage: 146 / 157 aa (93.0%)
1 aa157 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[2-83] | Response_reg[86-149]
- Domain count: 2
- Matched identifier: RROC_2212443
- Positioned domains: HATPase_c 2-83 ; HATPase_c 2-83 ; Response_reg 86-149 ; Response_reg 86-149
Cluster members and taxonomy
Representative gene: GCF_003482385#DXB02_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 982 · GCF_003482385
AssemblyASM348238v1 · Scaffoldhaploid
Genome composition3 767 213 bp · 47,0% GCBlautia sp. OF11-22
Signal transduction countsGenes 103 · HK 52 · RR 48CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key