1 Response_reg#1
5-118 aa · 114 aa · 21.9% of protein
Raw token
Response_reg:5:9.86e-22:118:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB02_RS02250
Response regulator, unclassified
Blautia sp. OF11-22 · GCF_003482385
ClassRRTypeunclassifiedLength520 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482385#DXB02_RS02250Stable P2CS identifier used across views.
GenomeGCF_003482385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length520 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 520 aa (29.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa520 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
480-516 aa · 37 aa · 7.1% of protein
Raw token
HTH_AraC:480:0.0000000338:516:37:42- Raw architecture: Response_reg:5:9.86e-22:118:114:111#HTH_AraC:480:0.0000000338:516:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482385::NZ_QUMA01000002.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span170759-172321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB02_02250RefSeq proteinWP_117804703.1
Context group ID
GCF_003482385::NZ_QUMA01000002.1::G00023Context members
DXB02_RS02250
Partner locus tags
DXB02_RS02250
Partner old locus tags
DXB02_02250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117804703.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB02_RS02250Primary locus identifier stored in the genes table.
Old locus tagDXB02_02250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMA01000002.1Sequence record reported by the local genomic context database.
Genomic interval170 759-172 321 nt1 563 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span170 759-172 321 ntGCF_003482385::NZ_QUMA01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482385::NZ_QUMA01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMA01000002.1All displayed genes belong to this local TCS context.
Neighborhood span170 759-172 321 nt1 563 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 759 nt172 321 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB02_RS02250GCF_003482385#DXB02_RS02250
RRunclassifiedCurrent focus
170 759-172 321 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS09055Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0126194
Simplified PFAM architecture for RROC_0126194
PFAM domain coverage: 193 / 520 aa (37.1%)
1 aa520 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[439-518]
- Domain count: 2
- Matched identifier: RROC_0126194
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 439-518 ; HTH_18 439-518
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS09055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 982 · GCF_003482385
AssemblyASM348238v1 · Scaffoldhaploid
Genome composition3 767 213 bp · 47,0% GCBlautia sp. OF11-22
Signal transduction countsGenes 103 · HK 52 · RR 48CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key