1 Response_reg#1
7-117 aa · 111 aa · 47.4% of protein
Raw token
Response_reg:7:2.28e-34:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29747_RS02875
Response regulator OmpR family
Clostridioides difficile · GCF_003482365
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482365#CDIF29747_RS02875Stable P2CS identifier used across views.
GenomeGCF_003482365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:155:2.19e-26:231:77:77- Raw architecture: Response_reg:7:2.28e-34:117:111:111#Trans_reg_C:155:2.19e-26:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482365::NZ_CP019864.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span535437-537739Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29747_00571RefSeq proteinWP_003417859.1
Context group ID
GCF_003482365::NZ_CP019864.1::G00006Context members
CDIF29747_RS02870CDIF29747_RS02875
Partner locus tags
CDIF29747_RS02870CDIF29747_RS02875
Partner old locus tags
CDIF29747_00570CDIF29747_00571
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417859.1Primary protein accession used for annex mappings.
UniProt accessionD5Q0B0Primary UniProt accession resolved in the annex database.
UniProt IDD5Q0B0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29747_RS02875Primary locus identifier stored in the genes table.
Old locus tagCDIF29747_00571Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP019864.1Sequence record reported by the local genomic context database.
Genomic interval537 035-537 739 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span535 437-537 739 ntGCF_003482365::NZ_CP019864.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482365::NZ_CP019864.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP019864.1All displayed genes belong to this local TCS context.
Neighborhood span535 437-537 739 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
535 437 nt537 739 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF29747_RS02870GCF_003482365#CDIF29747_RS02870
HKClassic
535 437-537 044 nt · Forward (+)
CDIF29747_RS02875GCF_003482365#CDIF29747_RS02875
RROmpRCurrent focus
537 035-537 739 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047422
Simplified PFAM architecture for RROC_1047422
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-117] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1047422
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482365
AssemblyASM348236v1 · Complete Genomehaploid
Genome composition4 071 596 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key