1 Response_reg#1
9-114 aa · 106 aa · 44.7% of protein
Raw token
Response_reg:9:9.34e-29:114:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29745_RS17890
Response regulator OmpR family
Clostridioides difficile · GCF_003482345
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482345#CDIF29745_RS17890Stable P2CS identifier used across views.
GenomeGCF_003482345Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 237 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-232 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:157:1.67e-28:232:76:77- Raw architecture: Response_reg:9:9.34e-29:114:107:111#Trans_reg_C:157:1.67e-28:232:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482345::NZ_CP019857.1::G00054
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3822341-3823054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29745_03541RefSeq proteinWP_009898517.1
Context group ID
GCF_003482345::NZ_CP019857.1::G00054Context members
CDIF29745_RS17890
Partner locus tags
CDIF29745_RS17890
Partner old locus tags
CDIF29745_03541
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009898517.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29745_RS17890Primary locus identifier stored in the genes table.
Old locus tagCDIF29745_03541Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP019857.1Sequence record reported by the local genomic context database.
Genomic interval3 822 341-3 823 054 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 822 341-3 823 054 ntGCF_003482345::NZ_CP019857.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482345::NZ_CP019857.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP019857.1All displayed genes belong to this local TCS context.
Neighborhood span3 822 341-3 823 054 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 822 341 nt3 823 054 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF29745_RS17890GCF_003482345#CDIF29745_RS17890
RROmpRCurrent focus
3 822 341-3 823 054 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0219200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961597
Simplified PFAM architecture for RROC_0961597
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[157-232]
- Domain count: 2
- Matched identifier: RROC_0961597
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 157-232 ; Trans_reg_C 157-232
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0219200
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 193 total members. Page 1 / 4.
GCF_000154625#QAB_RS0219200 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482345
AssemblyASM348234v1 · Complete Genomehaploid
Genome composition4 240 646 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key