1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.52e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF29745_RS17485
Response regulator OmpR family
Clostridioides difficile · GCF_003482345
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003482345#CDIF29745_RS17485Stable P2CS identifier used across views.
GenomeGCF_003482345Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.26e-22:223:75:77- Raw architecture: Response_reg:5:1.52e-23:114:111:111#Trans_reg_C:150:2.26e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003482345::NZ_CP019857.1::G00051
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span3735654-3739148Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF29745_03457RefSeq proteinWP_003432361.1
Context group ID
GCF_003482345::NZ_CP019857.1::G00051Context members
CDIF29745_RS17485CDIF29745_RS17490CDIF29745_RS17495
Partner locus tags
CDIF29745_RS17485CDIF29745_RS17490CDIF29745_RS17495
Partner old locus tags
CDIF29745_03457CDIF29745_03458CDIF29745_03459
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003432361.1Primary protein accession used for annex mappings.
UniProt accessionQ180B0Primary UniProt accession resolved in the annex database.
UniProt IDQ180B0_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF29745_RS17485Primary locus identifier stored in the genes table.
Old locus tagCDIF29745_03457Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP019857.1Sequence record reported by the local genomic context database.
Genomic interval3 735 654-3 736 334 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 735 654-3 739 148 ntGCF_003482345::NZ_CP019857.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482345::NZ_CP019857.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP019857.1All displayed genes belong to this local TCS context.
Neighborhood span3 735 654-3 739 148 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 735 654 nt3 739 148 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
CDIF29745_RS17485GCF_003482345#CDIF29745_RS17485
RROmpRCurrent focus
3 735 654-3 736 334 nt · Reverse (-)
CDIF29745_RS17490GCF_003482345#CDIF29745_RS17490
HKClassic
3 736 384-3 738 399 nt · Reverse (-)
CDIF29745_RS17495GCF_003482345#CDIF29745_RS17495
RROmpR
3 738 471-3 739 148 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS17365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407979
Simplified PFAM architecture for RROC_1407979
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407979
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS17365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482345
AssemblyASM348234v1 · Complete Genomehaploid
Genome composition4 240 646 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key